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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
ChIP-seq
202
DNase-seq
26
ATAC-seq
5
FAIRE-seq
Assay category
389
DNA binding
233
DNA accessibility
Target of assay
349
histone
349
histone modification
218
broad histone mark
131
narrow histone mark
40
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
1
chromatin remodeller
Date released
208
June, 2019
97
May, 2019
64
April, 2019
63
November, 2017
62
October, 2019
45
October, 2018
36
August, 2017
14
September, 2018
10
November, 2018
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2495
bam
2317
bigWig
1322
tsv
1240
bed narrowPeak
833
fastq
622
bigBed narrowPeak
304
tagAlign
258
bed bed3+
258
bed broadPeak
221
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
20
bedpe bed3+
20
hic
11
bed bed3
7
bed bedgraph
7
csv
3
cool
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
616
Homo sapiens
Biosample type
512
tissue
107
primary cell
cell line
3
in vitro differentiated cells
Organ
127
brain
103
kidney
94
heart
84
limb
84
pancreas
83
vasculature
79
blood vessel
75
epithelium
liver
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
622
AMP
Genome assembly (visualization)
610
GRCh38
547
hg19
Lab
622
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
liver
biosample_type!
cell line
BIOSAMPLE
ASSAY
622 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
heart
7
18
+ See 51 more…
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
+ See 22 more…
in vitro differentiated cells
adipocyte
1
2
See all biosamples
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