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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
311
ChIP-seq
118
total RNA-seq
28
ATAC-seq
9
WGBS
8
DNase-seq
5
GRO-seq
2
FAIRE-seq
2
RRBS
1
pCHi-C
Assay category
311
DNA binding
118
Transcription
38
DNA accessibility
11
DNA methylation
Target of assay
122
transcription factor
112
histone
112
histone modification
75
control
60
broad histone mark
51
narrow histone mark
27
RNA binding protein
12
chromatin remodeller
3
other context
3
other post-translational modification
Date released
201
August, 2017
58
October, 2018
39
February, 2018
34
December, 2018
34
November, 2018
31
December, 2017
25
January, 2019
24
May, 2022
17
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2114
bam
1905
bigWig
1161
tsv
1047
bed narrowPeak
577
bigBed narrowPeak
484
fastq
229
bed bed3+
216
tagAlign
212
bed broadPeak
175
bigBed broadPeak
161
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
5
csv
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
Organism
477
Homo sapiens
Biosample type
primary cell
294
tissue
126
in vitro differentiated cells
60
cell line
4
stem cell
Organ
liver
213
pancreas
98
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
19
epithelium
12
brain
2
musculature of body
Project
484
AMP
Genome assembly (visualization)
392
hg19
379
GRCh38
5
hg18
Lab
458
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
inconsistent control
Audit category:
32
missing controlled_by
Audit category:
24
inconsistent control read length
1
inconsistent assembly
organ_slims!
liver
biosample_type!
primary cell
BIOSAMPLE
ASSAY
484 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
GRO-seq
FAIRE-seq
RRBS
pCHi-C
tissue
islet of Langerhans
28
103
20
1
1
body of pancreas
33
4
2
2
spleen
20
1
2
1
pancreas
16
2
1
omental fat pad
11
1
1
+ See 6 more…
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
Posterior foregut
5
1
+ See 6 more…
cell line
GM12878
60
stem cell
hESC
3
1
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