Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
287
ChIP-seq
118
total RNA-seq
28
ATAC-seq
9
WGBS
8
DNase-seq
5
GRO-seq
2
FAIRE-seq
2
RRBS
1
pCHi-C
Assay category
287
DNA binding
118
Transcription
38
DNA accessibility
11
DNA methylation
Target of assay
112
transcription factor
98
histone
98
histone modification
75
control
51
broad histone mark
46
narrow histone mark
27
RNA binding protein
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
191
August, 2017
57
October, 2018
37
February, 2018
34
December, 2018
34
November, 2018
25
January, 2019
24
May, 2022
20
December, 2017
17
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2090
bam
1921
bigWig
1161
tsv
1063
bed narrowPeak
572
bigBed narrowPeak
460
fastq
219
bed bed3+
216
tagAlign
212
bed broadPeak
175
bigBed broadPeak
161
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
5
csv
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
Organism
453
Homo sapiens
Biosample type
primary cell
289
tissue
109
in vitro differentiated cells
60
cell line
2
stem cell
Organ
liver
208
pancreas
92
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
24
embryo
24
spleen
18
epithelium
12
brain
2
musculature of body
Project
460
AMP
Genome assembly (visualization)
368
hg19
355
GRCh38
5
hg18
Lab
434
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
32
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
organ_slims!
liver
biosample_type!
primary cell
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
460 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
GRO-seq
FAIRE-seq
RRBS
pCHi-C
tissue
islet of Langerhans
28
103
20
1
1
body of pancreas
32
4
2
2
spleen
20
1
2
1
pancreas
12
2
1
omental fat pad
11
1
1
+ See 6 more…
in vitro differentiated cells
adipocyte
47
1
pancreatic endoderm
16
4
1
primitive gut cell
6
2
1
definitive endodermal cell
4
2
1
embryonic stem cell
3
2
+ See 6 more…
cell line
GM12878
60
stem cell
hESC
1
1
See all biosamples
Download