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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
ChIP-seq
89
total RNA-seq
3
RRBS
3
WGBS
Assay category
156
DNA binding
89
Transcription
DNA accessibility
6
DNA methylation
Target of assay
90
histone
90
histone modification
47
narrow histone mark
43
transcription factor
42
broad histone mark
23
control
8
RNA binding protein
3
chromatin remodeller
Date released
251
August, 2017
76
February, 2023
60
October, 2018
59
September, 2018
50
July, 2018
44
April, 2018
39
February, 2018
38
September, 2020
34
December, 2018
31
December, 2017
28
November, 2018
25
January, 2019
18
February, 2021
9
November, 2017
9
October, 2017
6
May, 2022
6
September, 2017
5
January, 2018
4
August, 2018
3
June, 2018
Available data
251
fastq
247
bam
245
bigWig
115
bed narrowPeak
89
tsv
65
tagAlign
39
bed broadPeak
30
bed bed3+
27
bigBed narrowPeak
13
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
244
Homo sapiens
Biosample type
144
tissue
54
primary cell
53
in vitro differentiated cells
Organ
163
pancreas
70
connective tissue
liver
26
epithelium
17
adipose tissue
2
musculature of body
Project
251
AMP
Genome assembly (visualization)
227
hg19
224
GRCh38
Lab
251
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
15
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
liver
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
251 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
WGBS
tissue
islet of Langerhans
22
89
pancreas
14
white adipose tissue
12
adipose tissue
2
3
skeletal muscle tissue
2
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
in vitro differentiated cells
adipocyte
53
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