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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
66
single cell RNA-seq
57
ChIP-seq
32
ATAC-seq
6
WGBS
Assay category
147
Transcription
57
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
39
histone
39
histone modification
23
narrow histone mark
16
broad histone mark
16
control
2
RNA binding protein
2
transcription factor
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
19
September, 2020
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
4
December, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
291
bam
277
bigWig
242
fastq
151
tsv
132
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
bed bed3+
6
hic
5
bed bedMethyl
5
bedpe bed3+
5
bigBed bedMethyl
3
cool
3
tagAlign
1
hdf5
1
tar
Organism
242
Homo sapiens
Biosample type
238
primary cell
4
in vitro differentiated cells
Organ
471
pancreas
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
173
AMP
69
HPAP
Genome assembly (visualization)
167
GRCh38
159
hg19
Lab
173
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
organ_slims!
liver
BIOSAMPLE
ASSAY
242 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
12
13
13
6
pancreatic beta cell
21
12
13
10
pancreatic ductal cell
4
9
13
4
pancreatic acinar cell
4
9
8
5
pancreatic delta cell
11
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in vitro differentiated cells
Hepatic endoderm
4
See all biosamples
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