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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
single cell RNA-seq
120
total RNA-seq
61
ChIP-seq
32
ATAC-seq
27
snATAC-seq
6
WGBS
1
DNase-seq
1
RRBS
Assay category
248
Transcription
61
DNA binding
60
DNA accessibility
7
DNA methylation
Target of assay
73
histone
73
histone modification
40
narrow histone mark
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
56
September, 2018
48
July, 2018
45
February, 2021
42
August, 2017
41
September, 2020
38
April, 2018
9
November, 2017
7
August, 2020
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
498
bam
485
bigWig
376
fastq
265
tsv
178
bed narrowPeak
153
zippedFastqFolder
86
bigBed narrowPeak
46
tagAlign
39
bed broadPeak
39
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
376
Homo sapiens
Biosample type
376
primary cell
259
tissue
102
in vitro differentiated cells
60
cell line
3
stem cell
Organ
231
pancreas
222
epithelium
9
brain
6
vasculature
3
blood vessel
3
connective tissue
Project
207
AMP
169
HPAP
Genome assembly (visualization)
196
GRCh38
193
hg19
Lab
207
AMP-T2D consortium
169
Klaus Kaestner, Upenn
Audit category:
27
audit script error
7
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
liver
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
376 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
primary cell
pancreatic alpha cell
12
52
10
13
6
Langerhans cell
34
27
pancreatic beta cell
12
21
10
10
exocrine cell
39
pancreatic ductal cell
9
4
7
4
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