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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
Hi-C
Assay category
17
3D chromatin structure
Date released
7
March, 2020
3
October, 2022
2
November, 2019
2
October, 2019
1
August, 2021
1
March, 2019
1
March, 2023
Available data
2435
bam
2262
bigWig
1295
tsv
1218
bed narrowPeak
767
fastq
681
bigBed narrowPeak
272
tagAlign
258
bed broadPeak
235
bed bed3+
221
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
17
hic
14
bedpe bed3+
7
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
17
Homo sapiens
Biosample type
10
tissue
6
primary cell
in vitro differentiated cells
1
cell line
Organ
7
pancreas
6
epithelium
3
blood vessel
3
heart
3
vasculature
liver
2
musculature of body
2
vein
1
kidney
Project
13
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
11
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
organ_slims!
liver
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
17 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
See all biosamples
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