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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
Hi-C
21
snATAC-seq
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
21
3D chromatin structure
Date released
134
May, 2022
19
September, 2020
9
March, 2020
4
October, 2019
3
October, 2022
2
November, 2019
1
August, 2021
1
March, 2019
1
March, 2023
Available data
2711
bam
2507
bigWig
1426
tsv
1336
bed narrowPeak
893
fastq
684
bigBed narrowPeak
312
tagAlign
260
bed bed3+
259
bed broadPeak
222
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
174
Homo sapiens
Biosample type
159
primary cell
10
tissue
4
in vitro differentiated cells
1
cell line
Organ
87
pancreas
86
epithelium
3
blood vessel
3
heart
3
vasculature
liver
2
musculature of body
2
vein
1
kidney
Project
156
HPAP
17
AMP
1
ITG
Genome assembly (visualization)
20
hg19
1
GRCh38
Lab
156
Klaus Kaestner, Upenn
15
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
organ_slims!
liver
BIOSAMPLE
ASSAY
174 results
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Clear Filters
single cell RNA-seq
WGBS
ATAC-seq
Hi-C
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
+ See 1 more…
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
See all biosamples
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