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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
5
single cell RNA-seq
4
total RNA-seq
1
MPRA
1
snATAC-seq
Assay category
9
Transcription
1
DNA accessibility
Date released
89
February, 2021
4
February, 2023
1
May, 2022
1
October, 2022
Available data
2506
bam
2271
bigWig
1323
tsv
1136
bed narrowPeak
698
fastq
684
bigBed narrowPeak
257
bed broadPeak
256
bed bed3+
228
tagAlign
222
bigBed broadPeak
95
txt
33
bed bedMethyl
33
bigBed bedMethyl
17
bedpe bed3+
15
hic
11
bed bed3
7
csv
4
bed bedgraph
4
hdf5
2
ibed
1
tagAlign bed3+
1
tar
0
zippedFastqFolder
Organism
94
Homo sapiens
Biosample type
94
tissue
1
cell line
Organ
88
bone element
5
kidney
4
skeleton
1
musculature of body
Project
95
AMP
Genome assembly (visualization)
1
hg19
Lab
153
Klaus Kaestner, Upenn
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
84
inconsistent ontology term
6
audit script error
organ_slims!
liver
BIOSAMPLE
ASSAY
95 results
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RNA microarray
single cell RNA-seq
total RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
5
acetabular part of hip bone
1
ilium
1
ischium
1
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cell line
MIN6
1
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