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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ATAC-seq
187
single cell RNA-seq
158
ChIP-seq
144
total RNA-seq
48
snATAC-seq
47
WGBS
29
DNase-seq
9
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
333
Transcription
277
DNA accessibility
158
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
120
histone
120
histone modification
63
narrow histone mark
57
broad histone mark
31
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
53
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
29
July, 2019
20
May, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
417
bam
409
fastq
387
bigWig
175
bed narrowPeak
169
tsv
153
zippedFastqFolder
107
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
29
bed bed3+
12
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
835
Homo sapiens
Biosample type
2324
tissue
835
primary cell
332
in vitro differentiated cells
256
cell line
10
stem cell
Organ
406
epithelium
346
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
510
AMP
324
HPAP
1
ITG
Genome assembly (visualization)
400
hg19
345
GRCh38
Lab
510
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
liver
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
835 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
12
13
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
13
21
16
1
exocrine cell
39
pancreatic acinar cell
9
12
8
4
1
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