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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
136
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
183
DNA binding
138
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
36
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
67
August, 2017
39
February, 2018
30
August, 2021
28
December, 2017
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
258
bam
232
bigWig
131
tsv
125
fastq
96
bed narrowPeak
40
tagAlign
21
bed bed3+
7
bedpe bed3+
4
hic
2
ibed
Organism
336
Homo sapiens
Biosample type
1971
tissue
758
primary cell
336
in vitro differentiated cells
231
cell line
10
stem cell
Organ
79
connective tissue
29
embryo
24
epithelium
liver
3
pancreas
1
adipose tissue
1
heart
Project
336
AMP
Genome assembly (visualization)
240
hg19
233
GRCh38
4
hg18
Lab
292
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
liver
month_released!
June, 2019
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
336 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
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