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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1288
total RNA-seq
1254
ChIP-seq
463
ATAC-seq
360
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
54
pCHi-C
30
Hi-C
19
DNase-seq
19
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
19
DNA accessibility
Date released
June, 2019
8
October, 2019
6
November, 2018
4
August, 2017
1
November, 2020
Available data
17
bam
17
bed narrowPeak
17
bigBed narrowPeak
17
bigWig
14
bed broadPeak
14
bigBed broadPeak
12
bed bed3+
9
fastq
Organism
19
Homo sapiens
Biosample type
9
tissue
7
primary cell
2
cell line
1
in vitro differentiated cells
Organ
5
epithelium
4
blood vessel
4
limb
liver
4
pancreas
4
vasculature
3
connective tissue
3
kidney
artery
2
brain
2
nerve
2
vein
1
adipose tissue
1
spleen
Project
19
AMP
Genome assembly (visualization)
17
hg19
15
GRCh38
Lab
19
AMP-T2D consortium
organ_slims!
liver
artery
month_released!
June, 2019
BIOSAMPLE
ASSAY
19 results
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DNase-seq
tissue
body of pancreas
2
brain
2
tibial nerve
2
islet of Langerhans
1
omental fat pad
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
osteoblast
1
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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