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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
183
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
36
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
28
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
276
bam
245
bigWig
131
tsv
126
fastq
118
bed narrowPeak
40
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
379
Homo sapiens
Biosample type
2253
tissue
1021
primary cell
379
in vitro differentiated cells
261
cell line
10
stem cell
Organ
97
connective tissue
29
embryo
24
epithelium
liver
3
pancreas
1
adipose tissue
1
heart
Project
379
AMP
Genome assembly (visualization)
283
hg19
251
GRCh38
4
hg18
Lab
325
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
liver
month_released!
June, 2019
BIOSAMPLE
ASSAY
379 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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