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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
RRBS
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
22
August, 2017
9
July, 2019
7
May, 2019
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
66
bigWig
60
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
86
Homo sapiens
Biosample type
73
tissue
13
primary cell
Organ
930
pancreas
liver
681
connective tissue
512
epithelium
490
adipose tissue
384
heart
348
kidney
282
brain
231
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
86
AMP
Genome assembly (visualization)
66
hg19
51
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
organ_slims!
liver
month_released!
March, 2020
assay_title!
RRBS
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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