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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
17
single cell RNA-seq
6
WGBS
4
ATAC-seq
3
snDrop-seq
Assay category
31
DNA accessibility
17
Transcription
6
DNA methylation
Date released
239
August, 2021
205
February, 2023
141
February, 2021
136
May, 2022
122
May, 2021
101
August, 2017
64
October, 2019
59
September, 2020
57
May, 2020
47
September, 2023
46
March, 2020
24
February, 2020
23
July, 2019
19
April, 2020
16
January, 2021
15
May, 2023
13
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
November, 2018
1
September, 2018
Available data
bam
559
tsv
551
bigWig
89
txt
45
fastq
22
bed narrowPeak
8
tagAlign
5
csv
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
141
Homo sapiens
Biosample type
92
tissue
45
primary cell
4
in vitro differentiated cells
Organ
84
bone element
8
kidney
6
epithelium
6
pancreas
4
connective tissue
liver
Project
96
AMP
45
HPAP
Genome assembly (visualization)
4
hg19
Lab
96
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
organ_slims!
liver
files.file_type!
bam
BIOSAMPLE
ASSAY
141 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
ATAC-seq
snDrop-seq
tissue
bone element
84
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
in vitro differentiated cells
adipocyte
4
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