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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
26
ATAC-seq
20
total RNA-seq
2
Hi-C
Assay category
47
DNA binding
26
DNA accessibility
20
Transcription
2
3D chromatin structure
Target of assay
29
transcription factor
10
histone
10
histone modification
6
broad histone mark
6
control
4
narrow histone mark
3
RNA binding protein
2
chromatin remodeller
Date released
667
February, 2021
357
August, 2017
307
October, 2019
284
August, 2021
246
May, 2021
216
June, 2019
168
July, 2018
120
May, 2019
106
February, 2023
102
May, 2020
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
54
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
26
May, 2022
25
January, 2019
24
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
5
December, 2019
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
93
bam
67
bed narrowPeak
61
bigWig
34
fastq
30
bigBed narrowPeak
20
tsv
2
bedpe bed3+
2
hic
Organism
95
Homo sapiens
Biosample type
47
tissue
43
cell line
5
in vitro differentiated cells
Organ
55
pancreas
27
blood
27
bodily fluid
16
epithelium
7
spleen
1
adipose tissue
1
connective tissue
liver
Project
95
AMP
Genome assembly (visualization)
89
hg19
87
GRCh38
Lab
95
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
1
inconsistent control
organ_slims!
liver
BIOSAMPLE
ASSAY
95 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
spleen
7
adipose tissue(adipose white tissue)
1
cell line
GM12878
27
EndoC_BH1
13
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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