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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
26
ATAC-seq
20
total RNA-seq
6
DNase-seq
6
WGBS
2
Hi-C
1
FAIRE-seq
1
single cell RNA-seq
Assay category
34
DNA binding
33
DNA accessibility
21
Transcription
6
DNA methylation
2
3D chromatin structure
Target of assay
16
transcription factor
10
histone
10
histone modification
8
control
6
broad histone mark
4
narrow histone mark
3
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
712
February, 2021
399
May, 2021
357
August, 2017
307
October, 2019
284
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
August, 2022
Available data
93
bam
59
bed narrowPeak
59
bigWig
35
fastq
22
bigBed narrowPeak
20
tsv
6
bed bed3+
6
bed bedMethyl
6
bed broadPeak
6
bigBed bedMethyl
6
bigBed broadPeak
2
bedpe bed3+
2
hic
1
csv
Organism
96
Homo sapiens
Biosample type
59
tissue
31
cell line
5
in vitro differentiated cells
1
primary cell
Organ
62
pancreas
liver
16
epithelium
15
blood
15
bodily fluid
9
spleen
2
adipose tissue
2
brain
2
connective tissue
Project
96
AMP
Genome assembly (visualization)
84
GRCh38
81
hg19
Lab
96
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
organ_slims!
liver
month_released!
August, 2022
BIOSAMPLE
ASSAY
96 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
FAIRE-seq
single cell RNA-seq
tissue
islet of Langerhans
19
19
1
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
cell line
EndoC_BH1
13
1
1
1
GM12878
15
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
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