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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
30
ATAC-seq
30
pCHi-C
16
ChIP-seq
11
Hi-C
Assay category
34
Transcription
30
DNA accessibility
16
DNA binding
11
3D chromatin structure
Target of assay
13
histone
13
histone modification
7
narrow histone mark
6
broad histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
712
February, 2021
399
May, 2021
357
August, 2017
303
October, 2019
284
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
74
bam
62
tsv
50
bigWig
40
bed narrowPeak
13
bedpe bed3+
11
hic
2
ibed
Organism
121
Homo sapiens
Biosample type
76
tissue
27
cell line
13
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
69
pancreas
22
epithelium
7
heart
5
musculature of body
4
blood vessel
4
vasculature
3
connective tissue
liver
2
adipose tissue
2
brain
2
intestine
2
kidney
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
114
AMP
7
T1D
Genome assembly (visualization)
89
hg19
72
GRCh38
Lab
121
AMP-T2D consortium
Audit category:
39
inconsistent ontology term
organ_slims!
liver
ovary
BIOSAMPLE
ASSAY
121 results
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Clear Filters
total RNA-seq
ATAC-seq
pCHi-C
ChIP-seq
Hi-C
tissue
islet of Langerhans
21
21
2
1
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 15 more…
cell line
EndoC_BH1
3
3
14
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
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