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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
Hi-C
Assay category
1725
Transcription
1275
DNA binding
803
DNA accessibility
90
DNA methylation
30
3D chromatin structure
Date released
9
March, 2020
7
July, 2019
5
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
21
hic
18
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
Organism
30
Homo sapiens
Biosample type
15
tissue
9
primary cell
4
in vitro differentiated cells
2
cell line
Organ
9
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
26
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
24
hg19
2
GRCh38
Lab
23
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
liver
gonad
BIOSAMPLE
ASSAY
30 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
Panc1
1
See all biosamples
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