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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1338
total RNA-seq
1240
ChIP-seq
507
ATAC-seq
361
single cell RNA-seq
173
DNase-seq
87
RNA microarray
83
snATAC-seq
69
WGBS
53
pCHi-C
24
Hi-C
14
RRBS
13
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
14
DNA methylation
Date released
13
July, 2019
1
August, 2017
Available data
14
bed bedMethyl
14
bigBed bedMethyl
1
fastq
Organism
14
Homo sapiens
Biosample type
8
primary cell
6
tissue
Organ
6
epithelium
musculature of body
4
kidney
2
brain
2
heart
liver
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
14
AMP
Genome assembly (visualization)
14
hg19
Lab
14
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
liver
musculature of body
BIOSAMPLE
ASSAY
14 results
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RRBS
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
kidney epithelial cell
1
+ See 3 more…
tissue
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
pancreas
1
+ See 1 more…
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