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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1338
total RNA-seq
1240
ChIP-seq
507
ATAC-seq
361
single cell RNA-seq
173
DNase-seq
87
RNA microarray
83
snATAC-seq
69
WGBS
53
pCHi-C
24
Hi-C
14
RRBS
13
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
69
DNA methylation
Date released
41
May, 2022
10
July, 2019
6
August, 2017
6
February, 2021
6
November, 2018
Available data
41
zippedFastqFolder
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
15
fastq
6
tsv
Organism
69
Homo sapiens
Biosample type
47
primary cell
22
tissue
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
musculature of body
Project
47
HPAP
22
AMP
Genome assembly (visualization)
15
GRCh38
Lab
47
Klaus Kaestner, Upenn
22
AMP-T2D consortium
organ_slims!
liver
musculature of body
BIOSAMPLE
ASSAY
69 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
subcutaneous abdominal adipose tissue
3
aorta
2
body of pancreas
2
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