Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
DNase-seq
Assay category
183
DNA binding
138
Transcription
42
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
36
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
67
August, 2017
42
August, 2021
39
February, 2018
28
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
275
bam
244
bigWig
131
tsv
125
fastq
117
bed narrowPeak
40
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
bigBed narrowPeak
2
ibed
Organism
378
Homo sapiens
Biosample type
2237
tissue
1045
primary cell
378
in vitro differentiated cells
259
cell line
10
stem cell
Organ
96
connective tissue
29
embryo
24
epithelium
liver
3
pancreas
1
adipose tissue
1
heart
Project
378
AMP
Genome assembly (visualization)
282
hg19
250
GRCh38
4
hg18
Lab
324
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
liver
ovary
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
378 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
8
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 30 more…
See all biosamples
Download