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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
Hi-C
Assay category
1658
Transcription
1177
DNA binding
745
DNA accessibility
87
DNA methylation
26
3D chromatin structure
Date released
7
March, 2020
6
July, 2019
4
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
18
hic
16
bedpe bed3+
3
bed bed3+
3
bigWig
3
cool
3
hdf5
1
bedpe
Organism
26
Homo sapiens
Biosample type
14
tissue
6
primary cell
4
in vitro differentiated cells
2
cell line
Organ
9
pancreas
8
epithelium
6
musculature of body
5
blood vessel
vasculature
4
limb
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
22
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
20
hg19
2
GRCh38
Lab
19
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
liver
vasculature
BIOSAMPLE
ASSAY
26 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
heart
1
heart left ventricle
1
+ See 3 more…
primary cell
astrocyte of the cerebellum
1
brain pericyte
1
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
Panc1
1
See all biosamples
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