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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
total RNA-seq
749
ChIP-seq
239
ATAC-seq
174
DNase-seq
173
single cell RNA-seq
87
RNA microarray
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1053
Transcription
749
DNA binding
417
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
558
histone
558
histone modification
280
narrow histone mark
278
broad histone mark
141
control
55
transcription factor
26
RNA binding protein
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
236
October, 2019
230
August, 2017
223
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
93
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
25
May, 2022
24
February, 2020
23
October, 2017
16
November, 2018
15
May, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
Available data
1616
bam
1504
bigWig
922
tsv
868
bed narrowPeak
509
bigBed narrowPeak
291
fastq
210
bed broadPeak
198
bed bed3+
173
bigBed broadPeak
168
tagAlign
156
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
2377
Homo sapiens
Biosample type
2385
tissue
1018
primary cell
379
in vitro differentiated cells
261
cell line
10
stem cell
Organ
547
connective tissue
494
pancreas
488
adipose tissue
liver
313
heart
293
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
22
spleen
18
ureter
16
skeleton
15
epithelium
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2308
AMP
47
KPMP
21
T1D
9
LungMap
Genome assembly (visualization)
1618
GRCh38
1483
hg19
Lab
2099
AMP-T2D consortium
136
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
liver
target.investigated_as!
other context
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
2385 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
71
68
1
4
3
1
1
4
adipose tissue
382
2
3
1
3
kidney
49
27
75
13
64
1
1
1
bone element
84
heart left ventricle
3
35
2
3
18
1
4
1
1
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