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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
817
total RNA-seq
722
ChIP-seq
164
ATAC-seq
109
single cell RNA-seq
106
DNase-seq
85
RNA microarray
24
pCHi-C
23
WGBS
22
snATAC-seq
14
Hi-C
12
small RNA-seq
9
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
938
Transcription
722
DNA binding
295
DNA accessibility
32
DNA methylation
14
3D chromatin structure
Target of assay
538
histone
538
histone modification
270
narrow histone mark
268
broad histone mark
135
control
54
transcription factor
25
RNA binding protein
other context
3
other post-translational modification
2
nucleotide modification
Date released
536
February, 2021
232
October, 2019
230
August, 2017
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
95
June, 2019
82
November, 2017
74
October, 2018
65
July, 2019
57
April, 2019
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
May, 2022
24
February, 2020
23
October, 2017
19
April, 2020
16
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1518
bam
1413
bigWig
910
tsv
715
bed narrowPeak
422
bigBed narrowPeak
291
fastq
168
tagAlign
142
bed broadPeak
131
bed bed3+
105
bigBed broadPeak
95
txt
23
bed bedMethyl
23
bigBed bedMethyl
9
bedpe bed3+
9
hic
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2105
Homo sapiens
Biosample type
2114
tissue
1038
primary cell
379
in vitro differentiated cells
242
cell line
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
liver
313
heart
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
22
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2064
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1453
GRCh38
1392
hg19
Lab
1991
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
liver
kidney
target.investigated_as!
other context
BIOSAMPLE
ASSAY
2114 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
298
71
68
1
4
7
3
1
4
1
adipose tissue
382
2
3
1
3
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
left cardiac atrium
40
18
1
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