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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
Date released
15
July, 2019
6
August, 2017
2
February, 2023
Available data
19
bed bedMethyl
19
bigBed bedMethyl
4
fastq
Organism
23
Homo sapiens
Biosample type
11
tissue
10
primary cell
2
cell line
Organ
6
epithelium
5
musculature of body
4
kidney
2
brain
2
heart
2
liver
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
21
AMP
2
T1D
Genome assembly (visualization)
19
hg19
Lab
21
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
lymph node
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
23 results
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RRBS
HiChIP
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
EndoC_BH1
2
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