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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
906
ChIP-seq
260
ATAC-seq
178
DNase-seq
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
1053
Transcription
906
DNA binding
470
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
627
histone modification
626
histone
323
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
279
August, 2017
241
October, 2019
193
May, 2020
163
June, 2019
123
August, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
65
May, 2022
63
July, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
20
November, 2018
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1907
bam
1772
bigWig
984
bed narrowPeak
973
tsv
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
144
txt
64
xls
25
bed bedMethyl
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2568
Homo sapiens
Biosample type
2577
tissue
891
primary cell
661
cell line
392
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
499
pancreas
486
adipose tissue
359
liver
264
brain
234
kidney
213
heart
158
bone element
126
blood vessel
126
vasculature
121
limb
78
musculature of body
71
artery
56
eye
43
nerve
23
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2536
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1843
GRCh38
1746
hg19
Lab
2292
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
lymph node
files.file_type!
bigBed bedMethyl
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
2577 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
298
70
68
1
7
4
3
1
4
adipose tissue
382
2
3
1
1
liver
167
145
20
2
1
1
1
3
kidney
49
27
75
13
6
1
1
bone element
84
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