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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
311
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
52
ATAC-seq
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
MeRIP-seq
3
snDrop-seq
2
RRBS
1
DNase-seq
Assay category
1227
Transcription
311
DNA binding
81
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
187
control
107
histone
107
histone modification
57
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
213
August, 2017
166
May, 2020
165
August, 2021
120
July, 2018
90
October, 2019
56
July, 2019
47
September, 2023
40
May, 2021
38
March, 2020
32
February, 2023
29
October, 2018
28
May, 2022
25
February, 2020
24
November, 2017
22
May, 2019
20
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
12
December, 2017
11
October, 2017
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1907
bam
1772
bigWig
1076
tsv
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1764
Homo sapiens
Biosample type
1767
tissue
783
primary cell
262
in vitro differentiated cells
257
cell line
8
stem cell
Organ
532
connective tissue
473
adipose tissue
376
pancreas
247
liver
150
bone element
145
kidney
133
heart
72
brain
32
blood vessel
32
vasculature
29
limb
28
musculature of body
26
eye
20
lung
16
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1672
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
969
hg19
960
GRCh38
Lab
1557
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
organ_slims!
lymph node
files.file_type!
bigBed bedMethyl
bed narrowPeak
BIOSAMPLE
ASSAY
1767 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
MeRIP-seq
snDrop-seq
RRBS
DNase-seq
tissue
islet of Langerhans
298
50
31
7
4
3
4
adipose tissue
382
1
2
1
1
liver
167
63
1
1
1
1
3
kidney
49
7
64
11
6
1
bone element
84
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