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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
361
ChIP-seq
168
single cell RNA-seq
132
total RNA-seq
103
ATAC-seq
87
RNA microarray
27
snATAC-seq
25
WGBS
24
pCHi-C
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
361
DNA binding
300
Transcription
147
DNA accessibility
27
DNA methylation
5
3D chromatin structure
Target of assay
189
histone
189
histone modification
168
control
105
broad histone mark
84
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
222
August, 2021
104
August, 2017
93
February, 2021
76
November, 2017
73
October, 2019
47
September, 2023
40
May, 2024
29
October, 2018
27
February, 2023
27
May, 2022
23
May, 2020
22
February, 2020
21
March, 2020
19
April, 2020
16
June, 2019
15
April, 2019
15
July, 2019
14
May, 2023
12
December, 2017
11
May, 2019
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
241
bam
172
bed narrowPeak
156
txt
148
tsv
133
tagAlign
124
bigWig
83
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bigBed broadPeak
15
bed bedMethyl
15
bigBed bedMethyl
6
csv
1
bedpe bed3+
Organism
955
Homo sapiens
Biosample type
958
tissue
454
primary cell
130
cell line
97
in vitro differentiated cells
7
stem cell
Organ
207
kidney
200
heart
122
brain
93
liver
92
pancreas
88
bone element
65
connective tissue
64
adipose tissue
63
blood vessel
vasculature
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
863
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1754
GRCh38
hg19
Lab
649
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
organ_slims!
lymph node
vasculature
assembly!
hg19
BIOSAMPLE
ASSAY
958 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
64
49
75
6
islet of Langerhans
39
32
26
7
4
1
4
liver
62
1
20
3
1
bone element
84
left cardiac atrium
40
18
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