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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
27
ChIP-seq
13
DNase-seq
11
ATAC-seq
6
snATAC-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
113
Transcription
31
DNA accessibility
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
64
August, 2021
47
September, 2023
23
April, 2019
14
May, 2023
13
June, 2019
5
February, 2021
4
October, 2019
2
July, 2019
1
December, 2019
Available data
98
bed narrowPeak
xls
62
txt
41
bam
34
bigWig
32
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
5
csv
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
173
Homo sapiens
Biosample type
173
tissue
Organ
173
kidney
Project
126
AMP
47
KPMP
Genome assembly (visualization)
44
GRCh38
36
hg19
Lab
78
Katalin Susztak, Upenn
48
AMP-T2D consortium
47
KPMP
Audit category:
5
audit script error
organ_slims!
lymph node
files.file_type!
xls
BIOSAMPLE
ASSAY
173 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
FAIRE-seq
Hi-C
RRBS
tissue
kidney
64
49
27
13
11
6
1
1
1
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