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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
925
total RNA-seq
109
single cell RNA-seq
pCHi-C
16
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
1050
Transcription
1
DNA accessibility
Date released
452
February, 2021
143
May, 2020
116
July, 2018
99
August, 2021
89
August, 2017
47
July, 2019
38
May, 2021
25
February, 2020
19
November, 2019
8
March, 2020
8
October, 2019
6
April, 2018
4
February, 2023
2
December, 2019
Available data
1907
bam
1772
bigWig
1056
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1056
Homo sapiens
Biosample type
1056
tissue
270
primary cell
129
in vitro differentiated cells
114
cell line
Organ
456
connective tissue
398
adipose tissue
274
pancreas
153
liver
108
heart
58
bone element
21
brain
13
blood vessel
13
vasculature
12
kidney
7
limb
6
musculature of body
5
eye
5
nerve
4
artery
3
epithelium
1
spinal cord
Project
1056
AMP
Genome assembly (visualization)
918
hg19
917
GRCh38
Lab
1055
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
audit script error
1
inconsistent ontology term
organ_slims!
lymph node
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
1056 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue
381
islet of Langerhans
261
6
1
liver
147
1
bone tissue
58
heart left ventricle
3
18
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