Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
total RNA-seq
5
pCHi-C
1
ATAC-seq
Assay category
104
Transcription
1
DNA accessibility
Date released
78
February, 2021
9
March, 2020
8
August, 2021
5
January, 2019
4
May, 2021
4
October, 2019
1
May, 2020
1
November, 2019
Available data
582
bam
508
bigWig
427
fastq
390
bed narrowPeak
355
bigBed narrowPeak
110
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
110
Homo sapiens
Biosample type
1075
tissue
270
primary cell
131
in vitro differentiated cells
110
cell line
4
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
35
epithelium
34
pancreas
8
embryo
6
kidney
6
liver
1
mammary gland
Project
108
AMP
2
T1D
Genome assembly (visualization)
105
hg19
104
GRCh38
Lab
110
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
organ_slims!
lymph node
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
110 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
pCHi-C
ATAC-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
H1-hESC
8
HepG2
5
1
RCC 7860 vector
1
1
+ See 7 more…
See all biosamples
Download