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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
820
total RNA-seq
173
ChIP-seq
159
ATAC-seq
84
RNA microarray
29
snATAC-seq
19
pCHi-C
19
single cell RNA-seq
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
Assay category
839
Transcription
188
DNA accessibility
173
DNA binding
7
DNA methylation
Target of assay
140
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
21
transcription factor
12
control
5
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
313
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
857
bigWig
849
bam
748
tsv
221
bed narrowPeak
121
fastq
98
tagAlign
96
txt
12
bed bed3
8
bed bed3+
7
bed bedgraph
6
csv
Organism
1318
Homo sapiens
Biosample type
680
tissue
342
primary cell
174
in vitro differentiated cells
123
cell line
Organ
471
connective tissue
387
adipose tissue
159
bone element
149
pancreas
110
epithelium
105
heart
101
artery
101
blood vessel
101
vasculature
31
eye
16
skeleton
8
kidney
6
limb
3
liver
2
embryo
1
bone marrow
1
brain
1
thymus
Project
1022
AMP
176
T1D
121
HPAP
Genome assembly (visualization)
935
hg19
879
GRCh38
Lab
937
AMP-T2D consortium
258
Kyle Gaulton, UCSD
121
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
229
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
lymph node
BIOSAMPLE
ASSAY
1319 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
single cell RNA-seq
WGBS
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNAme array
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
41
11
2
coronary artery
35
+ See 27 more…
primary cell
monocyte
52
85
13
1
1
Langerhans cell
27
12
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
pancreatic alpha cell
27
6
+ See 20 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
6
cardiac precursors (cardiac muscle cell)
18
adipocyte
5
5
induced pluripotent stem cell
9
+ See 17 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
30
1
16
3
2
1
HepG2
1
1
iPSC derived cell line
2
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