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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
12
single cell RNA-seq
9
ChIP-seq
8
ATAC-seq
6
WGBS
Assay category
35
DNA accessibility
12
Transcription
9
DNA binding
6
DNA methylation
Target of assay
7
histone
7
histone modification
6
broad histone mark
2
control
1
narrow histone mark
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
0
May, 2019
Available data
707
bam
662
bigWig
559
tsv
132
bed narrowPeak
103
bigBed narrowPeak
89
txt
62
fastq
22
tagAlign
6
csv
4
bed bedgraph
4
bed broadPeak
2
bed bed3
2
bed bed3+
Organism
62
Homo sapiens
Biosample type
45
primary cell
17
tissue
Organ
11
pancreas
10
brain
6
epithelium
1
adipose tissue
1
connective tissue
1
spleen
Project
45
HPAP
17
AMP
Genome assembly (visualization)
14
GRCh38
13
hg19
Lab
45
Klaus Kaestner, Upenn
16
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
audit script error
Audit category:
4
missing controlled_by
organ_slims!
lymph node
BIOSAMPLE
ASSAY
62 results
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snATAC-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
tissue
brain
9
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
omental fat pad
1
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