Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
18
small RNA-seq
16
snATAC-seq
15
RRBS
10
WGBS
6
Hi-C
4
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
60
Transcription
25
DNA methylation
22
DNA accessibility
6
3D chromatin structure
Target of assay
3
control
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
266
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
75
bigWig
73
bam
60
tsv
22
bed bedMethyl
22
bigBed bedMethyl
5
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
113
Homo sapiens
Biosample type
78
tissue
35
primary cell
Organ
25
heart
18
brain
18
connective tissue
14
pancreas
13
epithelium
12
adipose tissue
12
vasculature
blood vessel
11
kidney
10
liver
10
musculature of body
8
blood
8
bodily fluid
5
limb
3
artery
2
pericardium
1
eye
Project
97
AMP
16
T1D
Genome assembly (visualization)
82
hg19
71
GRCh38
Lab
97
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
lymph node
blood vessel
BIOSAMPLE
ASSAY
113 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
small RNA-seq
snATAC-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
islet of Langerhans
4
1
omental fat pad
4
1
pancreas
4
1
right lobe of liver
2
2
1
+ See 22 more…
primary cell
peripheral blood mononuclear cell
8
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 17 more…
See all biosamples
Download