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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
65
total RNA-seq
9
ATAC-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
DNase-seq
1
Hi-C
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
91
DNA binding
67
Transcription
10
DNA accessibility
1
3D chromatin structure
Target of assay
63
transcription factor
18
control
10
RNA binding protein
10
chromatin remodeller
8
histone
8
histone modification
7
recombinant protein
4
broad histone mark
4
narrow histone mark
Date released
68
February, 2021
28
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
11
August, 2021
6
March, 2020
5
February, 2023
2
March, 2023
1
January, 2018
1
October, 2022
Available data
165
bam
140
bigWig
81
bed narrowPeak
69
tsv
61
bigBed narrowPeak
60
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
1
txt
Organism
179
Homo sapiens
Biosample type
2400
tissue
681
primary cell
370
in vitro differentiated cells
182
cell line
10
stem cell
Organ
liver
92
pancreas
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
175
AMP
5
T1D
2
community
Genome assembly (visualization)
148
hg19
147
GRCh38
Lab
172
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
16
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
organ_slims!
lymph node
epithelium
liver
BIOSAMPLE
ASSAY
182 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
HiChIP
DNase-seq
Hi-C
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
1
H1-hESC
8
EndoC_BH1
3
2
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