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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
16
ChIP-seq
8
ATAC-seq
2
STARR-seq
2
pCHi-C
1
DNase-seq
Assay category
56
Transcription
16
DNA binding
9
DNA accessibility
Target of assay
11
transcription factor
7
recombinant protein
5
control
Date released
66
February, 2021
15
October, 2019
2
August, 2021
2
March, 2020
Available data
81
bam
68
bigWig
58
tsv
20
bed narrowPeak
6
tagAlign
1
bigBed narrowPeak
Organism
85
Homo sapiens
Biosample type
612
tissue
85
cell line
49
primary cell
1
in vitro differentiated cells
Organ
401
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
85
AMP
Genome assembly (visualization)
76
GRCh38
76
hg19
Lab
83
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
organ_slims!
lymph node
BIOSAMPLE
ASSAY
85 results
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total RNA-seq
ChIP-seq
ATAC-seq
STARR-seq
pCHi-C
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
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