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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
11
snATAC-seq
10
single cell RNA-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
45
DNA accessibility
39
DNA binding
18
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
19
April, 2020
10
July, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
115
Homo sapiens
Biosample type
102
tissue
14
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
97
AMP
19
LungMap
Genome assembly (visualization)
73
hg19
53
GRCh38
Lab
97
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
organ_slims!
lymph node
thymus
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
DNase-seq
snATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
small RNA-seq
ATAC-seq
WGBS
tissue
skeletal muscle tissue
22
1
1
1
4
1
1
muscle of leg
7
13
1
lung
10
9
1
muscle of arm
17
gastrocnemius medialis
4
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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