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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
90
ChIP-seq
6
WGBS
3
small RNA-seq
2
Hi-C
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
90
DNA binding
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
47
histone
47
histone modification
29
broad histone mark
26
control
18
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
18
October, 2019
12
July, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
May, 2023
Available data
454
bam
431
bigWig
401
tsv
41
fastq
17
bed narrowPeak
16
bigBed narrowPeak
8
tagAlign
4
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
bigBed broadPeak
2
hic
Organism
501
Homo sapiens
Biosample type
480
tissue
21
primary cell
1
in vitro differentiated cells
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
502
AMP
Genome assembly (visualization)
432
hg19
429
GRCh38
Lab
502
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
12
missing controlled_by
organ_slims!
lymph node
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
502 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
Hi-C
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
white adipose tissue
12
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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