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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
35
DNase-seq
8
Hi-C
5
RRBS
1
ATAC-seq
1
FAIRE-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
56
DNA binding
38
DNA accessibility
8
3D chromatin structure
6
DNA methylation
1
Transcription
Target of assay
48
histone
48
histone modification
29
broad histone mark
19
narrow histone mark
8
control
Date released
43
June, 2019
26
August, 2017
21
October, 2019
7
May, 2019
6
July, 2019
3
March, 2020
2
May, 2022
1
January, 2018
Available data
83
bigWig
77
bam
73
bed narrowPeak
60
bigBed narrowPeak
50
bed broadPeak
37
bigBed broadPeak
36
bed bed3+
15
tagAlign
tsv
4
bed bedMethyl
4
bigBed bedMethyl
4
hic
3
bedpe bed3+
2
fastq
1
tar
1
txt
Organism
109
Homo sapiens
Biosample type
75
tissue
34
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
lymph node
1
pericardium
1
skin of body
1
thymus
Project
109
AMP
Genome assembly (visualization)
84
hg19
59
GRCh38
Lab
109
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
2
audit script error
organ_slims!
lymph node
files.file_type!
tsv
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
FAIRE-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
+ See 2 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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