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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
39
DNase-seq
29
ATAC-seq
25
total RNA-seq
8
Hi-C
6
RRBS
5
pCHi-C
2
small RNA-seq
1
FAIRE-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
70
DNA accessibility
61
DNA binding
28
Transcription
8
3D chromatin structure
7
DNA methylation
Target of assay
51
histone
51
histone modification
29
broad histone mark
22
narrow histone mark
9
control
1
RNA binding protein
1
transcription factor
Date released
50
June, 2019
42
October, 2019
31
February, 2023
26
August, 2017
11
July, 2019
7
May, 2019
6
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
106
bed narrowPeak
89
bigWig
84
bam
66
bigBed narrowPeak
54
bed broadPeak
41
bigBed broadPeak
40
bed bed3+
15
tagAlign
14
tsv
5
bed bedMethyl
5
bigBed bedMethyl
4
hic
3
bedpe bed3+
2
fastq
1
tar
1
txt
Organism
179
Homo sapiens
Biosample type
138
tissue
41
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
179
AMP
Genome assembly (visualization)
124
hg19
71
GRCh38
Lab
179
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
2
audit script error
organ_slims!
lymph node
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
FAIRE-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
islet of Langerhans
2
1
14
4
muscle of leg
7
13
1
retina
3
15
3
muscle of arm
17
+ See 6 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
skeletal muscle satellite cell
8
1
1
retinal pigment epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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