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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
Assay category
436
Transcription
287
DNA accessibility
276
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
31
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
28
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
Available data
245
bigWig
239
bam
224
bed narrowPeak
100
tagAlign
94
fastq
55
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
276
Homo sapiens
Biosample type
905
tissue
484
cell line
276
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
92
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
eye
Project
192
AMP
84
T1D
Genome assembly (visualization)
245
hg19
205
GRCh38
Lab
159
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
mammary gland
eye
BIOSAMPLE
ASSAY
276 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
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