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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
3
DNA accessibility
2
3D chromatin structure
Date released
4
October, 2019
1
March, 2020
1
May, 2021
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
6
Homo sapiens
Biosample type
6
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
5
AMP
1
T1D
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
5
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
organ_slims!
mammary gland
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
6 results
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Clear Filters
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
2
2
1
megakaryocyte
1
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