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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
99
total RNA-seq
28
ATAC-seq
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
pCHi-C
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
106
DNA binding
101
Transcription
30
DNA accessibility
2
3D chromatin structure
Target of assay
64
transcription factor
23
control
20
histone
20
histone modification
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
10
narrow histone mark
7
recombinant protein
3
nucleotide modification
Date released
94
February, 2021
30
October, 2019
27
December, 2018
21
May, 2021
18
January, 2019
16
November, 2019
15
November, 2018
13
August, 2021
10
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
October, 2022
Available data
216
bam
190
bigWig
103
tsv
96
bed narrowPeak
62
bigBed narrowPeak
60
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
256
Homo sapiens
Biosample type
2376
tissue
1074
primary cell
379
in vitro differentiated cells
260
cell line
10
stem cell
Organ
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
mammary gland
Project
249
AMP
9
T1D
2
community
Genome assembly (visualization)
200
hg19
196
GRCh38
Lab
244
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
92
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
organ_slims!
mammary gland
liver
BIOSAMPLE
ASSAY
260 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
STARR-seq
pCHi-C
Capture-C
DNase-seq
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
15
33
19
6
3
2
1
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
1
H1-hESC
8
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