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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
32
ChIP-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
3
Hi-C
3
total RNA-seq
2
DNase-seq
2
single cell RNA-seq
1
DNAme array
Assay category
93
DNA accessibility
32
DNA binding
11
DNA methylation
5
Transcription
3
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
57
May, 2020
35
May, 2021
13
August, 2017
12
February, 2023
11
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
1
August, 2021
1
February, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
609
bam
bigWig
295
bed narrowPeak
264
tsv
240
fastq
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
161
Homo sapiens
Biosample type
1005
tissue
161
primary cell
139
cell line
135
in vitro differentiated cells
7
stem cell
Organ
33
epithelium
12
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
7
connective tissue
7
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
136
AMP
24
T1D
1
ITG
Genome assembly (visualization)
29
hg19
17
GRCh38
Lab
Klaus Kaestner, Upenn
136
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
16
inconsistent ontology term
1
audit script error
organ_slims!
mammary gland
lab.title!
Klaus Kaestner, Upenn
files.file_type!
bigWig
BIOSAMPLE
ASSAY
161 results
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Clear Filters
ATAC-seq
ChIP-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
total RNA-seq
DNase-seq
single cell RNA-seq
DNAme array
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
1
CD4-positive, alpha-beta memory T cell
22
monocyte
13
1
1
1
1
macrophage
11
1
peripheral blood mononuclear cell
8
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