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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
20
total RNA-seq
11
ChIP-seq
2
Hi-C
1
snATAC-seq
Assay category
65
DNA accessibility
20
Transcription
11
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
75
bam
75
bed narrowPeak
51
bigWig
20
tsv
18
fastq
2
bedpe bed3+
2
hic
1
bed bed3+
1
txt
Organism
98
Homo sapiens
Biosample type
79
tissue
14
cell line
5
in vitro differentiated cells
Organ
71
pancreas
20
liver
14
epithelium
1
adipose tissue
1
connective tissue
1
musculature of body
Project
98
AMP
Genome assembly (visualization)
98
hg19
57
GRCh38
Lab
60
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
20
inconsistent ontology term
1
audit script error
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
snATAC-seq
tissue
islet of Langerhans
37
19
1
liver
20
adipose tissue(adipose white tissue)
1
skeletal muscle tissue
1
cell line
EndoC_BH1
1
1
11
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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