Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ATAC-seq
45
total RNA-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
1
Hi-C
Assay category
118
DNA accessibility
79
Transcription
41
DNA methylation
1
3D chromatin structure
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
46
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
62
bam
57
bed narrowPeak
39
bigWig
24
fastq
19
tsv
7
txt
1
bed bed3+
1
bedpe bed3+
1
hic
Organism
239
Homo sapiens
Biosample type
134
primary cell
105
tissue
Organ
143
pancreas
80
epithelium
40
liver
2
musculature of body
Project
134
HPAP
105
AMP
Genome assembly (visualization)
78
hg19
38
GRCh38
Lab
134
Klaus Kaestner, Upenn
41
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
1
audit script error
organ_slims!
mammary gland
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
239 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
islet of Langerhans
37
25
1
liver
20
20
skeletal muscle tissue
1
1
Download