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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
43
single cell RNA-seq
8
total RNA-seq
1
Hi-C
Assay category
108
DNA binding
51
Transcription
1
3D chromatin structure
Target of assay
43
transcription factor
33
control
30
histone
30
histone modification
19
broad histone mark
13
RNA binding protein
11
narrow histone mark
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
159
bam
139
fastq
126
bigWig
75
bed narrowPeak
75
bigBed narrowPeak
51
tsv
Organism
160
Homo sapiens
Biosample type
87
tissue
45
primary cell
28
cell line
Organ
92
pancreas
35
epithelium
27
blood
27
bodily fluid
25
connective tissue
23
adipose tissue
7
spleen
1
liver
Project
160
AMP
Genome assembly (visualization)
126
GRCh38
126
hg19
Lab
160
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
1
inconsistent control read length
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
160 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
spleen
7
+ See 2 more…
primary cell
pancreatic acinar cell
6
2
pancreatic delta cell
7
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 5 more…
cell line
GM12878
27
HepG2
1
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