Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
55
total RNA-seq
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
81
DNA accessibility
55
Transcription
8
3D chromatin structure
6
DNA methylation
Target of assay
3
control
3
nucleotide modification
Date released
52
February, 2023
39
May, 2022
19
September, 2020
16
May, 2021
8
July, 2019
7
August, 2020
6
November, 2020
3
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
December, 2019
1
November, 2019
Available data
bam
301
bigWig
251
fastq
151
bed narrowPeak
150
tsv
76
bigBed narrowPeak
39
zippedFastqFolder
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
159
Homo sapiens
Biosample type
117
primary cell
28
cell line
15
tissue
Organ
210
kidney
210
pancreas
180
heart
160
epithelium
106
liver
93
bone element
87
connective tissue
54
eye
51
vasculature
50
blood vessel
45
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
105
HPAP
55
AMP
Genome assembly (visualization)
28
hg19
10
GRCh38
Lab
105
Klaus Kaestner, Upenn
49
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
organ_slims!
mammary gland
files.file_type!
bam
assay_title!
WGBS
BIOSAMPLE
ASSAY
160 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
1
pancreatic beta cell
16
11
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
+ See 9 more…
cell line
EndoC_BH1
18
1
6
2
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
See all biosamples
Download