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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
107
ChIP-seq
22
ATAC-seq
5
DNase-seq
3
small RNA-seq
2
Hi-C
2
RRBS
Assay category
157
Transcription
107
DNA binding
27
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
65
histone modification
64
histone
43
narrow histone mark
41
transcription factor
21
broad histone mark
4
RNA binding protein
3
chromatin remodeller
1
control
Date released
170
May, 2020
50
December, 2017
20
August, 2017
20
May, 2022
9
July, 2019
7
November, 2018
7
October, 2019
5
December, 2019
3
August, 2021
2
June, 2019
2
March, 2020
Available data
290
bigWig
271
bam
157
tsv
133
bed narrowPeak
77
fastq
65
bigBed narrowPeak
30
tagAlign
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
1
hic
Organism
295
Homo sapiens
Biosample type
cell line
268
tissue
14
in vitro differentiated cells
13
primary cell
Organ
600
pancreas
589
connective tissue
426
adipose tissue
295
liver
259
epithelium
164
brain
124
heart
117
kidney
101
vasculature
96
limb
95
blood vessel
73
musculature of body
70
bone element
34
eye
31
nerve
29
artery
21
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
295
AMP
Genome assembly (visualization)
295
hg19
263
GRCh38
Lab
275
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
mammary gland
biosample_type!
cell line
BIOSAMPLE
ASSAY
295 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
RRBS
tissue
liver
147
83
20
2
1
1
1
right lobe of liver
2
7
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
3
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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